PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma70g00490.1
Common NameZOSMA_70G00490
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LBD
Protein Properties Length: 266aa    MW: 28571.6 Da    PI: 9.8155
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma70g00490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.72.8e-3141081100
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++dC+++p++     p++q +++ +++k++G++ +l+l++a p+++r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q
  Zosma70g00490.1   4 SCNGCRVLRKGCSEDCTIRPCLqwiksPEAQGNATVFLAKFYGRAGLLNLINAGPDKHRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNRQLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallkee 100
                      +++e++l +e+
  Zosma70g00490.1  98 AAVEAVLKGEP 108
                      ****9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.0493109IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCT IRPCLQWIKS PEAQGNATVF LAKFYGRAGL LNLINAGPDK  60
HRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNRQLCQAAV EAVLKGEPIV QIPSEKAADI  120
SIPPLKTFDI RHVTKNAAKL NVSKASQTPF KLSSIGAGAK HVNRLRRPRR ERSHHESGGG  180
TTTTTTSSAS GSMISAETVE PSTPDPERRT TSVDPEDELD LTLGLGFSSS AKANKHSSLS  240
SCSPNQAKIP SERCRVDNLA LFLTA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171RPRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215745.18e-86hypothetical protein PRUPE_ppa009213mg
SwissprotQ9M8866e-79LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0K9NSR00.0A0A0K9NSR0_Z
STRINGGSMUA_Achr4P13790_0012e-83(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-80LOB domain-containing protein 41